Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNLDILYCKLAMCTTLLTERLRLQPVDLSNINDFLEFSSDSETVFYMQRYKANTTEEAQMVLANVCMKSPLGI-YAMI-ETESNKMIGIIELEIRDEFSAEFGYILNKNYSGKGYMTEACSKLMSVGFEYLDLERIYARFDINNKKSGNVMERLGMKKEGELRHLAKNPKGEWKTRAYYSILKEEYFNKVNTK
2Z11 Chain:A ((13-176))
---------------------VRLEPLALAHLPAFLR-HYDPEVYRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEP-EHAKLELGTMLFKPFWGSPANKEAK-LLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARL
General information:
TITO was launched using:
RESULT:
Template:
2Z11.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60345 for 1156 contacts (-52.2/contact) +
2D Compatibility (PS) -16796 + (NN) -2845 + (LL) 2292
1D Compatibility (HY) -7600 + (ID) 2500
Total energy: -87794.0 ( -75.95 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_2Z11.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z11-query.scw
PDB file :
Tito_Scwrl_2Z11.pdb
: