Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKECRDFYRQIQHTYNDIAVREDAVLSSILLSASNGLI---KTSDVPRVAYELTQQLENNEIEKSFESLATVKELKKSAKKLS-------------ERYEQNKVTTGLLSKVFGNH
1TDP Chain:A ((1-110))
MDIKSQTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPSSMLTIYTQIQKDIKNGNIDTEKLRKYEIAKGLMSVPYIYF------
General information:
TITO was launched using:
RESULT:
Template:
1TDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8730 for 684 contacts (-12.8/contact) +
2D Compatibility (PS) -9676 + (NN) -434 + (LL) 108
1D Compatibility (HY) -4800 + (ID) 600
Total energy: -24132.0 ( -35.28 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_1TDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TDP-query.scw
PDB file :
Tito_Scwrl_1TDP.pdb
: