Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASIIYSPKDIFEQDFKVSMRGYDKKEVDVFLDDVIKDYENYLEQIEKLQMENRRLQQALD-------KKESEASNVRNSGTAMYNQKPIAQSATNFDILKRISRLEKEVFGRQIRE
1DEB Chain:A ((5-44))
--------------------------------------YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGSI-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1DEB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1855 for 113 contacts (16.4/contact) +
2D Compatibility (PS) -3896 + (NN) -2985 + (LL) 4612
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -4864.0 ( -43.04 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_1DEB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DEB-query.scw
PDB file :
Tito_Scwrl_1DEB.pdb
: