Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFENIIYGIDGNVATIMLNRPDISNGFNIPMCQEIIDAIRLVSENKDVMFLVIEAQGPIFSIGGDLKVMKAAVESDDISSLTKIAELVNQISYDLLQLEKPVVMCVDGAVAGAAANIALAADFVIASKKSKFIQAFVGVGLAPDAGGLLLLSKSIGITRAVQLALTGESLSAEKAEALGIVYKLCESDKIGKIKDQLLKRLSRHSINSYQAIKSLAWEAAFKDWEQYKKLELQLQESLAFKQDFKEGVRAHADRRRPNFLGK
3P5M Chain:A ((13-255))
----------DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDL---DT----------AGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNFRGH
General information:
TITO was launched using:
RESULT:
Template:
3P5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160872 for 2037 contacts (-79.0/contact) +
2D Compatibility (PS) -26660 + (NN) -12273 + (LL) 2008
1D Compatibility (HY) -6800 + (ID) 3950
Total energy: -208547.0 ( -102.38 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3P5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P5M-query.scw
PDB file :
Tito_Scwrl_3P5M.pdb
: