Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNRFAQLKENFEKGSPKRRVPTSRPIAAQKAPESYNKKGRYPFSLHQDVRYDKLEALVAYHGAKSASDYLERLIVQEW-----EKMQRKLKNKEK
3BMA Chain:A ((107-171))
--------------------------------SPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEE
General information:
TITO was launched using:
RESULT:
Template:
3BMA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3242 for 304 contacts (10.7/contact) +
2D Compatibility (PS) -6617 + (NN) -5265 + (LL) 1800
1D Compatibility (HY) -2400 + (ID) 750
Total energy: -9990.0 ( -32.86 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3BMA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BMA-query.scw
PDB file :
Tito_Scwrl_3BMA.pdb
: