Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNSEKVLNLIGLAQRAGRLITGEELVIKAIQNQQVSLIFLANDAGPNLTKKVTDKSNYYKTEVSTVF-STLELSDALGKPRKVVAVA--DAGFSKKMRTLMA
1YSH Chain:C ((7-102))
----ENINNKLQLVMKSGKYTLGYKTVLKTLRSSKGKLIILANNCPPLRKSEIEYYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGDSDIISTTT-
General information:
TITO was launched using:
RESULT:
Template:
1YSH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43219 for 619 contacts (-69.8/contact) +
2D Compatibility (PS) -9874 + (NN) -1910 + (LL) 196
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -61207.0 ( -98.88 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_1YSH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSH-query.scw
PDB file :
Tito_Scwrl_1YSH.pdb
: