Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKLGCLGVLMSIPFFIVVIVTIIFSSSQGDCQVTPDLSTQFVTSSDSASQTDWTKKGSIANVTAGKVFHAWVSKGLSGASAAGIVGWVNSEGGFGKYSWNYRYVTTAELKNEGYTFYNPAKLGYQIMKSVGTVGK
4JA0 Chain:A ((37-79))
--------------------------------------LNKDRITAGDG--AHDLEGKAAISNQTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETFFKD
General information:
TITO was launched using:
RESULT:
Template:
4JA0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1205 for 180 contacts (-6.7/contact) +
2D Compatibility (PS) -4096 + (NN) -108 + (LL) 3024
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -5085.0 ( -28.25 by residue)
QMean score : 0.096
(partial model without unconserved sides chains):
PDB file :
Tito_4JA0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JA0-query.scw
PDB file :
Tito_Scwrl_4JA0.pdb
: