Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKLLGQAGFGSRNQVKKLIRSRQVSVDGQIVTKDNVIVDSGLQSIFVGKERVCLKESSYYLLYKPSGVVSAVRDSEHKTVIDLISEKDRVEGLYPIGRLDRDTEGLLIITNNGPLGYRMLHPKHHVAKTYYVEVNGFLERDAITFFEEGV-VFDDGTKCKPAELTIDTANNDKSTARITITEGKFHQVKKMFLAYGVKVIYLRRISFGDLRLDMNLKPGQYRRLRDSEAAILKRYLD
1KSL Chain:A ((5-231))
-RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV----
General information:
TITO was launched using:
RESULT:
Template:
1KSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111500 for 1600 contacts (-69.7/contact) +
2D Compatibility (PS) -23959 + (NN) -4610 + (LL) 488
1D Compatibility (HY) -12400 + (ID) 4100
Total energy: -156081.0 ( -97.55 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1KSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KSL-query.scw
PDB file :
Tito_Scwrl_1KSL.pdb
: