Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDESLRQDLAQVTKKVILDLEDAQVERPTINMIQSLVENRLLDAGYIHTAEHYISYRLQRDLERNGYDDQITVHLHFEKIK
4OK9 Chain:A ((41-73))
-------GRVGAMEPQKIVAAIETAAKRHEVVDGSLYRDMHALYHAILEAVHGVTRGQVELGDLLRTAGLRFAVVRGTPYEQPKEGEWIAVALYGTIGAPVRGLEHEAVGLG
General information:
TITO was launched using:
RESULT:
Template:
4OK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2230 for 151 contacts (-14.8/contact) +
2D Compatibility (PS) -3569 + (NN) -588 + (LL) 824
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -8213.0 ( -54.39 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_4OK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OK9-query.scw
PDB file :
Tito_Scwrl_4OK9.pdb
: