Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLIGIVGTNSNKSTNRQLLQYMQQHFADKAEIELIEVKDLPLFNKPADK-NVPQVILDIAAKIEEADGVIIGTPEYDHSIPSALMSVLAWLSYGI-YPLLNKPVMITGASYGTLGSSRAQLQLRQILNAPELKASVLPDEFLLSHSLQAFDKDGNLHDIETSQKLDAIFDDFRLFVKITGKLSNARDLLQKEAENFDWESL
1RTT Chain:A ((7-164))
IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFGTARAQYHLRQTLVFLDVHPLNKP-EVMISSAQNAFDAQGRLLDDKARELIQQQLQALQL---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RTT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92734 for 1235 contacts (-75.1/contact) +
2D Compatibility (PS) -17491 + (NN) -8846 + (LL) 2024
1D Compatibility (HY) -6000 + (ID) 2550
Total energy: -125597.0 ( -101.70 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_1RTT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RTT-query.scw
PDB file :
Tito_Scwrl_1RTT.pdb
: