Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRIIVPATSANIGPGFDSIGVALS----KYLSIEVLEESTEWLVEHN----LVNIPKD-HTNLLIQTALHVKSDLA---PHRLKMFSDIPLARGLGSSSSVIVAGIELANQLGNLALSQKEKLEIATRLEG------HPDNVAPAIFGDLVI----SSIVKNDIKSLEVMFPDSSFIAFIPNYELKTSDSRNVLPQKLSYEDAVASS-SVANVMVASLLKGDLVTAGWAIERDLFHERYRQPLVKEFGVIKQISTQNGAYATYLSGAGPTVMVLCSKE-KEQPIVTELSKLCL---DGQIQVLNIERKGVRVEKR |
| 4RPF Chain:A ((3-308)) | VKIYAPASIGNVSVGFDVLGAAVSPIDGTLLGDCVSVTAAERFSLHNEGRFVSKLPDDPKQNIVYQCWERFCQEMGKEIPVAMVLEKNMPIGSGLGSSACSVVAGLMAMNEFCGQPLDKVTLLGMMGELEGRVSGSIHFDNVAPCYLGGMQLILEQEGYISQDVPG----FSDWLWVMAYPGIKVSTAEARAILPAQYRRQDCITHGRNLAGFIHACHTQQPDLAA--KMMKDVIAEPYRTQLLPGFAAARQAAQDIGALACGISGSGPTLFAVCNDQATAQRMAGWLQNHYLQNDEGFVHICRLDTAGARLLG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RPF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118120 for 2429 contacts (-48.6/contact) +
2D Compatibility (PS) -29645 + (NN) -3846 + (LL) 768
1D Compatibility (HY) -19200 + (ID) 3800
Total energy: -173843.0 ( -71.57 by residue)
QMean score : 0.358
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