Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFNLEQVKVFENYEIENWEEGQVTLTTKVVDSSLNYYGNAHGGYLFTLCDQVSGLVAISTGYEAVTLQSNINYLRAGRLDDLLTVIGTCVHNGRTTKVVDVHIKNQKGEMVTTAIFTMFVTGERKEK
4ZRF Chain:A ((8-126))
---HFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQEGRNVCKATFTMFVT------
General information:
TITO was launched using:
RESULT:
Template:
4ZRF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77077 for 901 contacts (-85.5/contact) +
2D Compatibility (PS) -12846 + (NN) -460 + (LL) 668
1D Compatibility (HY) -15600 + (ID) 4000
Total energy: -109315.0 ( -121.33 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_4ZRF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZRF-query.scw
PDB file :
Tito_Scwrl_4ZRF.pdb
: