Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLNAKGESNQILVDKEVHSTNLLLDIDEKPELFQGLLLSFQHVFAMFGATILVPLILGMPVSVALFASGCGTLIYQVATKFKVPVYLGSSFAYITAMALAMKQMHGDISAAQTGILFVGLIYVVVATVIKFVGNSWVDKILPPIIIGPMIIVIGLGLANSAVTNAGFVAKGDWRKMLVAVVTFLIAAFINTKGKGFIKIIPFLFAIIGGYILSIILGLVDLSPVEKAAWFELPKFYLPFKTGLFHSYKLYFGPEMLAILPISIVTIAENIGDHTVLGQICGRNFLKKPGLNRLLIGDGLATAF--SALIGGPAETTYGENTGVIGMTRIASVTVIRNAAFIA-IAFSFFGKFTALISTIPSAVLGGMAILLYGVIASNGLKVLIENRVNFAEVRNLIIASSMLVLGLGGAVLDLGALTLSGTALSAIVGIILNLILPKESMKS |
2DPN Chain:A ((186-296)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLP-ELLGAPVPIRGVLGDQQAALFGQAALGGGEGKCTYG--TGAFLLLNTGKRPVLSEKGLLATVAWSLGGRATYALEGSLFVAGAAVGWLKEVGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRD |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DPN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -50181 for 587 contacts (-85.5/contact) +
2D Compatibility (PS) -11229 + (NN) 1550 + (LL) 20476
1D Compatibility (HY) -4000 + (ID) 1650
Total energy: -45034.0 ( -76.72 by residue)
QMean score : -0.073
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