Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRLEIVDSKLRQAKKTEEYFNAIRTNIQFSGKENKI--LAITSVREGEGKSTTSTSLALSLAQAGFKTLLIDADTRNSVMSGTFKATGTIKGLTNYLSGNADLGDIICETNVPRLMVVPSGKVPPNPTALLQNAYFNKMIEAIKNIFDYIIIDTPPIGLVVDAAIIANACDGFILVTQAGRIKRNYVEKAKEQMEQSGSKFLGIILNKV--NESVATYGDYGDYGNYGKRDRKRK
4JMP Chain:A ((62-254))
------------------EKFRGIRSNIMFA-PDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNN-EGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPK------------------------
General information:
TITO was launched using:
RESULT:
Template:
4JMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127851 for 1556 contacts (-82.2/contact) +
2D Compatibility (PS) -20907 + (NN) -11985 + (LL) 1936
1D Compatibility (HY) -16000 + (ID) 3250
Total energy: -178057.0 ( -114.43 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_4JMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JMP-query.scw
PDB file :
Tito_Scwrl_4JMP.pdb
: