Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNIYGDYGRYLPLILEDFSQRIQLENDKAKVETGYKLYEHIIGRIKTSDSMIEKCRRKQLPVTVDSALKAIRDSIGVRIICGFVNDIYQIVERIKSFDDCRIVVEKDYIQHVKPNGYRSYHVILEIDTPYPDCLGNSEGKYYIEIQLRTIAQDSWASLEHQMKYKHDIENPERIVRELKRCADEMASVDLTMQTIRQLIESGTKKE
1VJ7 Chain:A ((234-328))
--------------------------------------LFGDVYGRPKHIYSIYRKMRDKK------KRFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHT-----TVYGP-------KGPIEIQIRTKEMHQVAEYGVAANWIKELVEL-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VJ7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33522 for 590 contacts (-56.8/contact) +
2D Compatibility (PS) -10275 + (NN) -3499 + (LL) 6268
1D Compatibility (HY) -6800 + (ID) 1750
Total energy: -49578.0 ( -84.03 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_1VJ7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VJ7-query.scw
PDB file :
Tito_Scwrl_1VJ7.pdb
: