Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSQKVILTNMCLIEDNKGRIVMQIRDPKRYSWSGAALPGGHIEEGESLYDALVREVHEETGLTISNPKLVGMKHWYT-DEG---IRYLVFLYKTYDFSGE-LQSSDEGDVVWIERSQLDKIELAYDMLNLLRVFDEDDISEMFYSKRLEDGFIRKFY
3FK9 Chain:A ((4-115))
--------VTN-CIVVDHDQVLLLQ--KPRRGWWVA---PGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMAAGDKWIFKHVLHSDRLLYGTFHYTPDFELLSYR
General information:
TITO was launched using:
RESULT:
Template:
3FK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43094 for 713 contacts (-60.4/contact) +
2D Compatibility (PS) -11147 + (NN) -738 + (LL) 1808
1D Compatibility (HY) -8400 + (ID) 1950
Total energy: -63521.0 ( -89.09 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_3FK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FK9-query.scw
PDB file :
Tito_Scwrl_3FK9.pdb
: