Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTQFLGEFLGTFILVLLGDGVVAGNVLSKTKEEGTGWTAIVFGWGIACTVAVYVSGLFSPAHLNPAVTLAMASIGAISWGQVIPFIIAQMLGAMVAATILWLHYYPHWKETKDSGLIL----------ASFST--GPAIRHTPSNLLGEIIGTAILVITIMAI---GPSKVAAGLGPIIVGIVIFAVGFSLGPTTGYAINPARDLGPRLMHAILPIEN---KGDSDWSYAWIPVVGPIIGGVLGAILYNIALTLI |
| 1LDA Chain:A ((10-252)) | --QCIAEFLGTGLLIFFGVGCVAA---LKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAV-EMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRH |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LDA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178365 for 1940 contacts (-91.9/contact) +
2D Compatibility (PS) -22613 + (NN) 74 + (LL) 376
1D Compatibility (HY) -26800 + (ID) 4200
Total energy: -231528.0 ( -119.34 by residue)
QMean score : 0.250
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