Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGFEQRLTRCQTAISQLSCDALLITNLTNIFYLTGFS--GTNATVLISPKHRIFVTDSRYALIAKNTVREFDIIISREPLAAILKIIRDDALMAIGFETDISYHMYKHMVEVFEDYRLIEAPSVVEKLRMIKDATELAIIRQACRISDQAFLDVLDFIKPDRTTELQVANFLDFRMRELGATGPSFDFIVASGYRSAMPHGVASQKTIQSGEALTLDFGCYYQHYVSDMTRTIHIGHVTDQEREIYDIVLKSNQAIIDNVKSGMKRCDYDYLARQVIENSGYGNHFTHGIGHGMGLDVHEIPYFGK-SEGVIASGMVVTDEPGIYLDNKYGVRIEDDLLITETGCEVLTSAPKELIVL |
1PV9 Chain:A ((8-345)) | ---------LVKFMDENSIDRVFIAKPVNVYYFSGTSPLGGGYIIVDGDEATLYVPELEYEMAKEESKLP---VVKFKKFDEIYEILKNTE--TLGIEGTLSYSMVENFKEKS-VKEFKKIDDVIKDLRIIKTKEEIEIIEKACEIADKAVMAAIEEITEGKR-EREVAAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQYDETVLKEGMVITIEPGIYIPKLGGVRIEDTVLITENGAKRLTKTER----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PV9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201038 for 2842 contacts (-70.7/contact) +
2D Compatibility (PS) -36163 + (NN) -13129 + (LL) 2472
1D Compatibility (HY) -27600 + (ID) 6000
Total energy: -281458.0 ( -99.04 by residue)
QMean score : 0.544
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