Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGV-KEMATWAGNWWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTATPGVVSYIYPN
2LRJ Chain:A ((9-90))
-----------------------------------------------------------NLYTAGQCTWYVYDKVGGEIGSTWGNANNWAAAAQGAGFTVNHTPSKGAILQSSEGPFGHVAYVESVNS-DGSVTISEMNYSGGPFSVSSRTISASEAGNYNYIHI-----
General information:
TITO was launched using:
RESULT:
Template:
2LRJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41051 for 568 contacts (-72.3/contact) +
2D Compatibility (PS) -9181 + (NN) -8389 + (LL) 5260
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -59861.0 ( -105.39 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_2LRJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LRJ-query.scw
PDB file :
Tito_Scwrl_2LRJ.pdb
: