Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIALFAGGDLTYFEYDFDY----FVGIDRGSLFLLKNGLSLDMAVGDFDSITEDELLYIKHYCSNIVSASAEKNDTDTELALKTIFKEFPEAQVTVFGAFGGRIDHMMSNIFLPSDTDLEPFMSQIRLKDEQNIVTYLPSGKNQVSRIEGMSYVSFMPESESTLQISGAKYELNKSNYFKKKMYSSNEFMTSPIEVELKDGYLIIIYSKDRG
3CQ9 Chain:A ((3-213))
-TIVNLLVGGPTANYPADLTTIPGPWVGADRGALRLVKRGIQPVMVVGDF---------TVKDALVGAIVVKPDQDHTDTQLAIKSIFEQLQPDEVHLYGATGGRLDHLLANMWLVLDPVFRQWAPQIKLIDKQNSVRFFLPGDYQITKEADKRYLAFVPLMPMHLTLPDEKYQLDAAYNAYPISWASNEFSGNTGHFSFDAGVLAVIQSRD--
General information:
TITO was launched using:
RESULT:
Template:
3CQ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118683 for 1559 contacts (-76.1/contact) +
2D Compatibility (PS) -21417 + (NN) -9687 + (LL) 772
1D Compatibility (HY) -13200 + (ID) 3200
Total energy: -165415.0 ( -106.10 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_3CQ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CQ9-query.scw
PDB file :
Tito_Scwrl_3CQ9.pdb
: