Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIFILEDDFVQQAHFEKIIKEIRVQYNLHFKTVETFAKPVQLLESIYEIGLHNLFFLDIEIKNDEQMGLEVAKQIRQVDPYAQIVFVTTHSELMPLTFRYQVSALDYIDKGLSQEEFSQRIEEVLLYVDGICNKPLVENSFYFKSRYSQVQLPFNDLLYIETSSRSHRVVLYTEKDRMEFTATLGDILKQEPRLFQCHRSFLVNPLNIFKVDRIDRLVYFQNGTTCLVSRNKVRDIVSIVDKYQKDRKR
4ML3 Chain:A ((1-132))
MKVLILEDVIEHQVRLERILDEISKESNIPI-SYKTTGKVREFEEYIE-----QLYFLAIDIHGIEKKGFEVAQLIRHYNPYAIIVFITSRSEFATLTYKYQVSALDFVDKDINDEMFKKRIEQNIFYTKSM----L-----------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4ML3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108078 for 955 contacts (-113.2/contact) +
2D Compatibility (PS) -13908 + (NN) -7277 + (LL) 8912
1D Compatibility (HY) -14000 + (ID) 2700
Total energy: -137051.0 ( -143.51 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4ML3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ML3-query.scw
PDB file :
Tito_Scwrl_4ML3.pdb
: