Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRITIFCGASTGENPVYSEKTVALAQWMAQNKHSLVYGGGKVGLMGVMADTVIANGGYTTGVIPTFLRDREIAHENLSELIIVNNMPERKAKMMLLGDAFIALPGGPGTLEEISEVISWSRIGQNDNPCILYNVNGYFNDLKNMFDHMVGEGFLSLEDRENVLFSDDITEIEDFITNYKVPSTRQY
1YDH Chain:A ((11-164))
-KICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEYT-------
General information:
TITO was launched using:
RESULT:
Template:
1YDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101913 for 1219 contacts (-83.6/contact) +
2D Compatibility (PS) -17596 + (NN) -10056 + (LL) 728
1D Compatibility (HY) -16400 + (ID) 3300
Total energy: -148537.0 ( -121.85 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_1YDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YDH-query.scw
PDB file :
Tito_Scwrl_1YDH.pdb
: