Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDIRQLRYFITIAQEQKITSAAKKLHMAQPPLSRQLKQLEDELGVVLFDRNKKKQMTLTYEGAVFLKRAKEILHRFEDAVIEVQELKEEVAGTLAVGSTIYCAALMLEKVTQI----KERYPHLTFNIWENEPATLLELLESRQIDAAVTTTLIKSDTVQFKQLDDIPCVLVLSDEAGYPCGD----TIKMVDIPSFPLILLRPVNGKGVYN-QVMNEFHRLNLEPRIVCECHDSATLLSLVSSGFGASILPVTMIPVHMRNHVHTVHIENNPFIMTPAVMWRTDSYLPKPAQQFLDLF
3K1M Chain:A ((1-254))MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKT-TPEGHFFYQYAIKLLSNV-DQMVSMTKRIASVEKTIRIG---FVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKHTLLRN--ERLMVAVHASHPLNQMKDKGVHLNDLID-EKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGEGISLVPASTQSIQLFN-------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3K1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 927 -127373 -137.40 -519.89
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -137.40
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.494

(partial model without unconserved sides chains):
PDB file : Tito_3K1M.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3K1M-query.scw
PDB file : Tito_Scwrl_3K1M.pdb: