Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTVHSSIDQHPDLLALRASFDRAAESTIAHFTFGLALLAGLYVAASPWIVGFSATRGLPTCDLIVGIAVAYLAYGFASALDRTHGMTWTLPVLGVWVIFSPWVLPGVAVTAGMMWSHIIAGAVVAVLGFYFGMRTRAAANQG
1W1R Chain:A ((371-401))
----------------------------------------------------------------------------YAAFLDRVHGEEVALNKLGLWRVPHPWL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1W1R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6688 for 102 contacts (-65.6/contact) +
2D Compatibility (PS) -2569 + (NN) 1597 + (LL) 8996
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -1664.0 ( -16.31 by residue)
QMean score : -0.215
(partial model without unconserved sides chains):
PDB file :
Tito_1W1R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W1R-query.scw
PDB file :
Tito_Scwrl_1W1R.pdb
: