Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTMLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS
1N61 Chain:A ((5-154))
-HIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAA--------
General information:
TITO was launched using:
RESULT:
Template:
1N61.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143006 for 1237 contacts (-115.6/contact) +
2D Compatibility (PS) -16417 + (NN) -5749 + (LL) 916
1D Compatibility (HY) -17600 + (ID) 4450
Total energy: -186306.0 ( -150.61 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_1N61.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N61-query.scw
PDB file :
Tito_Scwrl_1N61.pdb
: