Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTTVLGIETSCDETGVGIARLDPDGTVTLLADEVASSVDEHVRFGGVVPEIASRAHLEALGPAMRRALAAAGLKQPDI--VAATIGPGLAGALLVGVAAAKAYSAAWGVPFYAVNHLGGHLAADVYEHGPLPEC--VALLVSGGHTHLLHVRSLGEPIIELGSTVDDAAGEAYDKVARLLGLGYPGGKALDDLARTGDRDAIVFPRGMSGPADDR--YAFSFSGLKTAVARYVESHAADPGFRTADIAAGFQEAVADVLTMKAVRAATALGVSTLLIAGGVAANSRLR----ELATQRCGEAGRTLRIPSPRLCTDNGAMIAAFAAQLVAAGAPPSPLDVPSDPGLPVMQGQVR |
| 4YDU Chain:A ((3-333)) | ---VLGIETSCDETGIAIY----DDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAWDVPAIPVHHMEGHLLAPMLEDNP-PEFPFVALLVSGGHTQLISVTGIGQYEL-LGESIDDAAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPR----PMTDRPGLDFSFSGLKTFAANTIRDNGTDDQTR-ADIARAFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGE----VFYARPEFCTDNGAMIAYAGMVRFKAGA-TADLGVSVRPRWPLAE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215406 for 2878 contacts (-74.8/contact) +
2D Compatibility (PS) -35581 + (NN) -27379 + (LL) 764
1D Compatibility (HY) -26000 + (ID) 8050
Total energy: -311652.0 ( -108.29 by residue)
QMean score : 0.520
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