Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTDEDLIRAALAVAATAGPRDVPVGAVVVGADGTELARAVNAREALGDPTAHAEILAMRLAAGVLGDGWRLEGTTLAVTVEPCTMCAGALVLARVARLVFGAWEPKTGAVGSLWDVVRDRRLNHRPEVRGGVLARECAAPLEAFFARQRLG
2NX8 Chain:A ((35-161))
---------------------EIPIGCVIV-KDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGN-WRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGR--
General information:
TITO was launched using:
RESULT:
Template:
2NX8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100477 for 1040 contacts (-96.6/contact) +
2D Compatibility (PS) -14025 + (NN) -8448 + (LL) 1476
1D Compatibility (HY) -11600 + (ID) 2850
Total energy: -135924.0 ( -130.70 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_2NX8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NX8-query.scw
PDB file :
Tito_Scwrl_2NX8.pdb
: