Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTIDYNSYRTTTPYGKRVRFLVLHYTALDFAASVKALTTGAASAHYLIPAPHDPSYKAAGFKGQRIFNLVAEEDRAWHAGVSGWARRDNLNDTSIGIEIVNLA-RDDDGVFTFPDYERSQINALKQLAKNILQRYPDMTPKNVVGHSDIAVGRKSDPGPKLPWKELYEAGIGAWYDDATRDRYREGFERDGLPPRADLLEAFRLYGYALPATVDDAYFASLLRAFQMHFRPENYDGALDVETAAILYALNEKYPA
3D2Y Chain:A ((28-258))
-----------------RIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPA-VPPRYNGK----PRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARY-HIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQ
General information:
TITO was launched using:
RESULT:
Template:
3D2Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109537 for 1880 contacts (-58.3/contact) +
2D Compatibility (PS) -25282 + (NN) -18917 + (LL) 312
1D Compatibility (HY) -17200 + (ID) 5400
Total energy: -176024.0 ( -93.63 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_3D2Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D2Y-query.scw
PDB file :
Tito_Scwrl_3D2Y.pdb
: