Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARICLHAYVGGRVQGVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLGR-GPRHAEVSAVEVE-QMPLQGIAGFVVRR
2GV1 Chain:A ((1-92))
MSKVCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGGPRSARVERVLSEPHHPSGELTDFRIR-
General information:
TITO was launched using:
RESULT:
Template:
2GV1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34564 for 624 contacts (-55.4/contact) +
2D Compatibility (PS) -9564 + (NN) -1391 + (LL) 100
1D Compatibility (HY) -7200 + (ID) 2250
Total energy: -54869.0 ( -87.93 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_2GV1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GV1-query.scw
PDB file :
Tito_Scwrl_2GV1.pdb
: