Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVAERLCATPCGPVIEFAGIDLSLGGSRILDGVRLRVEAGSVHALVGPNGGGKSSLVKTLLG-QMPHRGELRLEWPGAPGCIGYVPQALEFDRGLPLTVDDFMAAMCQRRPAFLGLSRSRRPAIDAALE-----RVGMLAKRGRRMGALSGGERQRVLLAQGLVPPPQLLVLDEPMSALDEGGIQVFERLLLDWRQA-GVTVLWIEHDLEAVGRLADRVSGLNRHLLFDGPAASSLTPERLLTLFSTQPRKNAEASR
2NQ2 Chain:C ((20-225))
-----------------------------LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ-----SIGFVPQF--FSSPFAYSVLDIV--LMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR--EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTALF------------
General information:
TITO was launched using:
RESULT:
Template:
2NQ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121441 for 1471 contacts (-82.6/contact) +
2D Compatibility (PS) -21496 + (NN) -6694 + (LL) 2184
1D Compatibility (HY) -18400 + (ID) 3150
Total energy: -168997.0 ( -114.89 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_2NQ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NQ2-query.scw
PDB file :
Tito_Scwrl_2NQ2.pdb
: