Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRRAPMFKPLPITLQRGALRLEPLVEADIPELVSLAEANREALQYMD-GPTRPDWYRQSLAEQREGRA-----LPLAVRLGVQLVGTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRNHRRLAGGRLDDTFVYSITDHEWPQVKAALEASFTG
2ZXV Chain:A ((13-188))
-------------------VRLEPLALAHLPAF--LRHYDPEV-RFLSRAPVAPT--EEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEPEHAKLELG-TMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARLEARLY-
General information:
TITO was launched using:
RESULT:
Template:
2ZXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56599 for 1225 contacts (-46.2/contact) +
2D Compatibility (PS) -18265 + (NN) -4567 + (LL) 1880
1D Compatibility (HY) -11600 + (ID) 3350
Total energy: -92501.0 ( -75.51 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_2ZXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZXV-query.scw
PDB file :
Tito_Scwrl_2ZXV.pdb
: