Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPGAEAWQPTTDLASAGAFLYPARPLNDWDEIMLENTLERLETLVAELLQQNQALRDSHDQLQQQLRQATEENETLQLSMLEQEEKQSGTQARLEALVERLSAQQPVSA
3JAY Chain:A ((272-334))
-------------LAAIGA-LYP----NEFTENVLD--LSRLSTALLQL--SDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3JAY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1047 for 373 contacts (2.8/contact) +
2D Compatibility (PS) -6775 + (NN) -2974 + (LL) 3396
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -10856.0 ( -29.10 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_3JAY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JAY-query.scw
PDB file :
Tito_Scwrl_3JAY.pdb
: