Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKCLLLALALTCGAQALIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQCHI
1GX8 Chain:A ((2-162))
-----------------IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQCHI
General information:
TITO was launched using:
RESULT:
Template:
1GX8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107718 for 1243 contacts (-86.7/contact) +
2D Compatibility (PS) -16339 + (NN) 2766 + (LL) 2016
1D Compatibility (HY) -23600 + (ID) 8050
Total energy: -150925.0 ( -121.42 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_1GX8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GX8-query.scw
PDB file :
Tito_Scwrl_1GX8.pdb
: