Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLLLAALLTAGVTAHSISTRAVWQFRNMIKCTIPGSDPLREYNNYGCYCGLGGSGTPVDDLDRCCQTHDHCYNQAKKLESCKFLIDNPYTNTYSYKCSGNVITCSDKNNDCESFICNCDRQAAICFSKVPYNKEYKDLDTKKHC
4BP2 Chain:A ((8-128))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVL------NNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDKK---
General information:
TITO was launched using:
RESULT:
Template:
4BP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58045 for 823 contacts (-70.5/contact) +
2D Compatibility (PS) -12292 + (NN) -5985 + (LL) 2588
1D Compatibility (HY) -15200 + (ID) 4450
Total energy: -93384.0 ( -113.47 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_4BP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BP2-query.scw
PDB file :
Tito_Scwrl_4BP2.pdb
: