Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
3D84 Chain:X ((1-184))
VRPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPRGAHFLAKSLDDALRLIEQPELASKVDMVWIVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYKLLPEYPGVLSEVQEEKGIKYKFEVYEK-----
General information:
TITO was launched using:
RESULT:
Template:
3D84.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118315 for 1389 contacts (-85.2/contact) +
2D Compatibility (PS) -20077 + (NN) -9881 + (LL) 604
1D Compatibility (HY) -24800 + (ID) 7100
Total energy: -179569.0 ( -129.28 by residue)
QMean score : 0.744
(partial model without unconserved sides chains):
PDB file :
Tito_3D84.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D84-query.scw
PDB file :
Tito_Scwrl_3D84.pdb
: