Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND
1DHF Chain:A ((4-185))
----LNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN-
General information:
TITO was launched using:
RESULT:
Template:
1DHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111799 for 1344 contacts (-83.2/contact) +
2D Compatibility (PS) -19642 + (NN) -8845 + (LL) 124
1D Compatibility (HY) -26400 + (ID) 9100
Total energy: -175662.0 ( -130.70 by residue)
QMean score : 0.806
(partial model without unconserved sides chains):
PDB file :
Tito_1DHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DHF-query.scw
PDB file :
Tito_Scwrl_1DHF.pdb
: