Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERPQLDSMSQDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLTEEHKDQSPSQTEFLRQRPASLVQDTTSAETPRGKSQISTSSSQTPLLRWVLTLSFLLATVAVGIYAM
1IVJ Chain:A ((11-222))
----------QDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLT-------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1IVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93904 for 1674 contacts (-56.1/contact) +
2D Compatibility (PS) -23419 + (NN) -18909 + (LL) 5456
1D Compatibility (HY) -28000 + (ID) 10600
Total energy: -169376.0 ( -101.18 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_1IVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IVJ-query.scw
PDB file :
Tito_Scwrl_1IVJ.pdb
: