Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
1MMR Chain:A ((1-167))
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKR------
General information:
TITO was launched using:
RESULT:
Template:
1MMR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65133 for 1319 contacts (-49.4/contact) +
2D Compatibility (PS) -18463 + (NN) -16469 + (LL) 92
1D Compatibility (HY) -21200 + (ID) 8350
Total energy: -129523.0 ( -98.20 by residue)
QMean score : 0.845
(partial model without unconserved sides chains):
PDB file :
Tito_1MMR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MMR-query.scw
PDB file :
Tito_Scwrl_1MMR.pdb
: