Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
3UH2 Chain:A ((9-210))
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHA---GMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGR-------YAEYVIYRGEQAYPEYLITYQIMKP----
General information:
TITO was launched using:
RESULT:
Template:
3UH2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69160 for 1512 contacts (-45.7/contact) +
2D Compatibility (PS) -21067 + (NN) -9419 + (LL) 296
1D Compatibility (HY) -25200 + (ID) 9550
Total energy: -134100.0 ( -88.69 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_3UH2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UH2-query.scw
PDB file :
Tito_Scwrl_3UH2.pdb
: