Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNITNCTTEASMAIRPKTITEKMLICMTLVVITTLTTLLNLAVIMAIGTTKKLHQPANYLICSLAVTDLLVAVLVMPLSIIYIVMDRWKLGYFLCEVWLSVDMTCCTCSILHLCVIALDRYWAITNAIEYARKRTAKRAALMILTVWTISIFISMPP-LFWRSH-RRLSPPPSQCTIQH-DHVIYTIYSTLGAFYIPLTLILILYYRIYHAAKSL------------YQKRGSSRHLSNRSTDS--QNSFASCKLTQTF---------------------CVSDFSTSDPTTEFEKF-HASIRIPPFDNDLDHPGERQQISST-----------RERKAARILGLILGAFILSWLPFFIKELIVGLSIYTVSSEVADFLTWLGYVNSLINPLLYTSFNEDFKLAFKKLIRCREHT |
| 4U15 Chain:A ((8-398)) | -----------------TIWQVVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEKMNIFEMLRIDEGGGSGGDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTL------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4U15.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -237207 for 2414 contacts (-98.3/contact) +
2D Compatibility (PS) -34253 + (NN) -5863 + (LL) 1924
1D Compatibility (HY) -33200 + (ID) 5600
Total energy: -314199.0 ( -130.16 by residue)
QMean score : 0.303
|
|
|