Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFLNSSDQNLTSEELLNRMPSKILVSLTLSGLALMTTTINSLVIAAIIVTRKLHHPANYLICSLAVTDFLVAVLVMPFSIVYIVRESWIMGQVVCDIWLSVDITCCTCSILHLSAIALDRYRAITDAVEYARKRTPKHAGIMITIVWIISVFISMPP-LFWRH---QGTSRDDECIIKH-DHIVSTIYSTFGAFYIPLALILILYYKIYRAAKTL-------------YHKRQASRIAKEEVNGQVL-------LESGEKSTKSVSTSYVLEKSLSDPSTDFDKIHSTVRSL-------------RSEFKHEKSWRRQKI-----SGT------RERKAATTLGLILGAFVICWLPFFVKELVVNVCDKCKISEEMSNFLAWLGYLNSLINPLIYTIFNEDFKKAFQKLVRCRC |
| 4U16 Chain:A ((13-388)) | -----------------------VFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEKMNIFEMLRIDEGGGSGGDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSC-IPKTYWNLGYWLCYINSTVNPVCYALCN--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U16.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217178 for 2252 contacts (-96.4/contact) +
2D Compatibility (PS) -33083 + (NN) -84 + (LL) 2644
1D Compatibility (HY) -36400 + (ID) 5450
Total energy: -289551.0 ( -128.58 by residue)
QMean score : 0.291
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