Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASILNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALM-ITAVWVLAFAVSCPL-LFGFNTTGD---PTVCSISNP---DFVIYSSVVSFYLPFGVTVLVYARIYVVLKQR-------------------------RRKRILTRQNSQCNSVRPGFPQQTLSPDPAHLELKRYYSICQDTALGGPGFQERGGELKREEKTRNSLSPTIAPKLSLEVRKLSNGRLSTSLKLGPLQPRGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVS--PELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC |
| 4IB4 Chain:A ((24-413)) | -----------------------EQGNKLHWAALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQ----ANQYNSRATAFIKITVVWLISIGIAIPVPIKGIET---NPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHALQKKAADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQK----------------KDFRH----------GFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLQTIS--------NEQRASKVLGIVFFLFLLMWCPFFITNITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITC |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IB4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -223745 for 2403 contacts (-93.1/contact) +
2D Compatibility (PS) -33932 + (NN) -2867 + (LL) 1984
1D Compatibility (HY) -34400 + (ID) 5300
Total energy: -298260.0 ( -124.12 by residue)
QMean score : 0.240
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