Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNRSTADADGLLAGRGPAAGASAGASAGLAGQGAAALVGGVLLIGAVLAGNSLVCVSVATERALQTPTNSFIVSLAAADLLLALLVLPLFVYSEVQGGAWLLSPRLCDALMAMDVMLCTASIFNLCAISVDRFVAVAVPLRYNRQGGSRRQLLLIGATWLLSAAVAAPV-LCGLN-DVRGRDPAVCRLEDR---DYVVYSSVCSFFLPCPLMLLLYWATFRGLQRWEVARRAKLHGRAPRRPSGPGPPSPTPPAPRLPQDPCGPDCAPPAPGLPRGPCGPDCAPAAPGLPPDPCGPDCAPPAPGLPQDPCGPDCAPPAPGLPRGPCGPDCAPPAPGLPQDPCGPDCAPPAPGLPPDPCGSNCAPPDAVRAAALPPQTPPQTRRRRRAKITGRERKAMRVLPVVVGAFLLCWTPFFVVHITQALCPAC--SVPPRLVSAVTWLGYVNSALNPVIYTVFNAEFRNVFRKALRACC |
| 4NC3 Chain:A ((23-407)) | -------------------------EEQGNKLHWAALLI--LMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQANQYNSRATAFIKITVVWLISIGIAIPVPIKGIET-VDNPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHALQK----KAADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRA---------------------------------------KDFRHGFDILVGQ------------IDDALKLANEGKVKEAQAAAEQLK------------TTRNAYIQKYLQTISNEQRASKVLG----------IVFFLFLLMWCPFFITNITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -218459 for 2569 contacts (-85.0/contact) +
2D Compatibility (PS) -34847 + (NN) 19012 + (LL) -1416
1D Compatibility (HY) -36800 + (ID) 5550
Total energy: -278060.0 ( -108.24 by residue)
QMean score : 0.199
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