Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MARPDPSAPPSLLLLLLAQLVGRAAAASKAPVCQEITVPMCRGIGYNLTHMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLRFFLCSMYTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEVLCMDYNRSEATTAPPRPFPAKPTLPGPPGAPASGGECPAGGPFVCKCREPFVPILKESHPLYNKVRTGQVPNCAVPCYQPSFSADERTFATFWIGLWSVLCFISTSTTVATFLIDMER-FRYPERPIIFLSACYLCVSLGFLVRLVVG-HASVACSREHNHIHYE-TTGPAL-CTIVFLLVYFFGMASSIWWVILSLTW---FLAAGMKWGNEAIAGYAQYFHLAAWLIPSVKSITALALSSVDGDPVAGICYVGNQNLNSLRGFVLGPLVLYLLVGTLFLLAGFVSLFRIRS----VIKQGGTKTDKLEKLMIRIGIFTLLYTVPASIVVACYLYEQHYRESWE----------AALTCACPGHDTGQP---RAKPEYWVLMLKYFMCLVVGITSGVWIWSGKTVESWRRFTSRCCCRPRRGHKSGGAMAAGDYPEASAALTGRTGPPGPAATYHKQVSLSHV |
| 4JKV Chain:A ((115-467)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPLVRTDNP---KSWYEDVEGCGIQCQNPLFTEAEHQDMHSYIAAFGAVTGLCTLFTLATFVADWRNSNRYPAVILFYVNACFFVGSIGWLAQFMDGARREIVCRADGTMRLGEPTSNETLSCVIIFVIVYYALMAGVVWFVVLTYAWHTSFKALGTTY--QP--GKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICFVGYKNYRYRAGFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHPGLLSEKAAS--KINETMLRLGIFGFLAFGFVLITFSCHFYDFFNQAEWERSFRDYVLCQAN-------------CEIKNRPSLLVEKINLFAMFGTGIAMSTWVWTKATLLIWRRTWC-------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JKV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -278137 for 2456 contacts (-113.2/contact) +
2D Compatibility (PS) -31927 + (NN) -6434 + (LL) 10876
1D Compatibility (HY) -33600 + (ID) 5250
Total energy: -344472.0 ( -140.26 by residue)
QMean score : 0.286
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