Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDTGPDQSYFSGNHWFVFSVYLLTFLVGLPLNLLALVVFVGKLRCRPVAVDVLLLNLTASDLLLLLFLPFRMVEAANGMHWPLPFILCPLSGFIFFTTIYLTALFLAAVSIERFLSVAHP---LWYKTRPRLGQAGLVSVACWLLASAHCSVVYVIEFSGDISHSQGTNGTCYLEF------WKDQLAILLPVRLEMAVVLFVVPLIITSYCYSRLVWIL-------GRGGSHRRQRRVAGLVAATLLNFLVCFGPYNVSHVVGYICG------ESPVWRIYVTLLSTLNSCVDPFVYYFSSSGFQADFHELLRRLCGLWGQWQQESSMELKEQKGGEEQRADRPAERKTSEHSQGCGTGGQVACAEN |
| 5C1M Chain:A ((20-296)) | ----------------IMALYSIVCVVGLFGNFLVMYVIVRYTKMK-TATNIYIFNLALADALATSTLPFQSVNYLMGT-WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRT-PR--NAKIVNVCNWILSSA---IGLPVMFMATTKYRQGSID-CTLTFSHPTWYWENLLKICV------FIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYT-NSCLNPVLYAFLDENFKRCF----------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -253118 for 1919 contacts (-131.9/contact) +
2D Compatibility (PS) -26423 + (NN) -12675 + (LL) 4324
1D Compatibility (HY) -30400 + (ID) 3800
Total energy: -322092.0 ( -167.84 by residue)
QMean score : 0.308
|
|
|