Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVSVNSSHCFYNDSFKYTLYGCMFSMVFVLGLISNCVAIYIFICVLKVRNETTTYMINLAMSDLLFVFTLPFRIFYFTTRNWPFGDLLCKISVMLFYTNMYGSILFLTCISVDRFLAIVYPFKSKTLRTKRNAKIVCTGVWLTVIGGSAPAVFVQST-HSQGNNASEACFENFPEATWK-TYLSRIVIFIEIVGFFIPLILNVTCSSMVLKTLTKPVTLSRSKI---NKTKVLKMIFVHLIIFCFCFVPYNINLILYSLVR--TQTFVNCSVVAAVRTMYPITLCIAVSNCCFDPIVYYFTSDTIQNSIKMKNWSVRRSDFRFSEVHGAENFIQHNLQTLKSKIFDNESAA |
5C1M Chain:A ((23-294)) | ----------------------LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQG---SIDCTLTFSHPTWYWENLLKICVF--IFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVS--------WHFCIALGYTNSCLNPVLYAFLDENFKRCF------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -259195 for 1958 contacts (-132.4/contact) +
2D Compatibility (PS) -25686 + (NN) 2994 + (LL) 5396
1D Compatibility (HY) -32800 + (ID) 4400
Total energy: -313691.0 ( -160.21 by residue)
QMean score : 0.265
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