Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVQGSQRRLLGSLNSTPTAIPQLGLAANQTGARCLEVSISDGLFLSLGLVSLV---ENALVVATIAKNRNLHSPMYCFICCLALSDLLVSGSNVLETAVILLLEAGA-LVARAAVLQ-----QLDNVIDVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAVAAIWVASVVFSTLFIA--------------YYDH----------VAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPVHQGFGLKGAVTLTILLGIFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIICNAIIDPLIYAFHSQELRRTLKEVLTCSW |
2YCX Chain:A ((9-294)) | --------------------------------------QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVG---------LLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLC---VIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVA-LRVYREAKEQIRKIDRASKRKR-VMLMREHKALKTLGIIMGVFTLCWLPFFL-VNIVNVFNRDLVPDWLFVAFNW---LGYANSAMNPIIYC-RSPDFRKAFK------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -263032 for 1818 contacts (-144.7/contact) +
2D Compatibility (PS) -26532 + (NN) -13501 + (LL) 4460
1D Compatibility (HY) -28800 + (ID) 4200
Total energy: -331605.0 ( -182.40 by residue)
QMean score : 0.233
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