Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQAAGHPEPLDSRGSFSLPTMGANVSQDNGTGHNATFSEPLPFLYVLLPAVYSGICAVGLTGNTAVILVILRAPKMKTVTNVFILNLAVADGLFTLVLPVNIAEHLLQYWPFGELLCKLVLAVDHYNIFSSIYFLAVMSVDRYLVVLATVRSRHMPWRTYRGAKVASLCVWLGVTVLVLPFFSFAGVYSNELQVPSCGLSFPWPEQVWFKASRVYTLVLGFVLPVCTICVLYTDLLRRLRAVRLRSGAKALGKARRKVTVLVLVVLAVCLLCWTPFHLASVVALTTDLP-QTPLVISMSYVITSLSYANSCLNPFLYAFLDDNFRKNFRSILRC |
4RWA Chain:A ((121-406)) | -------------------------------------------LAIAITALYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKA--LDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAV-VCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLL---------GSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLC-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RWA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -252152 for 2108 contacts (-119.6/contact) +
2D Compatibility (PS) -27549 + (NN) -8074 + (LL) 2028
1D Compatibility (HY) -35200 + (ID) 5750
Total energy: -326697.0 ( -154.98 by residue)
QMean score : 0.287
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