Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEPQNTSTVTNFQLLGFQNLLEWQALLFVIFLLIYCLTIIGNVVIITVVSQGLRLHSPMYMFLQHLSFLEVWYTSTTVP----LLLANLLSWGQAISFSACMAQLYFFVFLGATECFLLAFMAYDRYLAICSPLRYPFLMHRGLCARLVVVSWCTGVSTGFLPSLMISRLDFCGRNQINHFFCDLPPLMQLSC-----------SRVYITEVTIFILSIAVLCICFFLTLGPYVFIVSSILRIPSTSGRRKTFSTCGSHLAVVTLYYGTMISMY-VCPSPHLLPEINKIISVFYTVVTP---------------LLNPVIYSLRNKDFKEAVRKVMRRKCGILWSTSKRKFLY |
2YCX Chain:A ((9-294)) | ---------------------QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFL----CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMM-------------HWWRDEDP-QALKCYQDPGCCDFVTNRAYAIASSIISFYIPLL-IMIFVALRVYREAKEQIRKIDRAS-KRKRVMLMREHKALKTL--GIIMGVFTLCWLPFFL--VN-IVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFK-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209171 for 1750 contacts (-119.5/contact) +
2D Compatibility (PS) -25323 + (NN) 150 + (LL) 4504
1D Compatibility (HY) -24400 + (ID) 3950
Total energy: -258190.0 ( -147.54 by residue)
QMean score : 0.216
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