Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGRMSTSNHTQFHPSSFLLLGIPGLEDVHIWIGVPFFFVYLVALLGNTALLFVIQTEQSLHEPMYYFLAMLDSIDLGLSTATIPKMLGIFWFNTKEISFG------GCLSHMFFIHFFTAMESIVLVAMAFDRYIAICKPLRYTMILT-SKIISLIAGIAVLRSLYMVVPLVFLLLRLPFCGHRIIPHTYCEHMGIARLAC---ASIKVNIRFGLGNISLLLLDVILIILSYVRILYAVF---------CLPSWEAR--LKALNTCGSHIGVILAFFTPAF--------FSFLTHRFGHNIP---QYIHIILANLYVVVPPALNPVIYGVRTKQIRERVLRIFLKTNH |
| 3VGA Chain:A ((16-302)) | ---------------------------------------IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI--------TISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP----MLGWNNCGQ-------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHA-PLWLMYLAIVLSHTNSVV----NPFIYAYRIREFRQTFRKIIRSHVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -237844 for 1801 contacts (-132.1/contact) +
2D Compatibility (PS) -24967 + (NN) -3153 + (LL) 4224
1D Compatibility (HY) -26800 + (ID) 3700
Total energy: -292240.0 ( -162.27 by residue)
QMean score : 0.200
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